michael donoghue (character evolution/comparative methods)

Weiblen, G., R. Oyama, M. J. Donoghue. Phylogenetic analysis of breeding system evolution in monocotyledons. Amer. Nat. In press.

Baum, D. A. and M. J. Donoghue. A likelihood framework for the phylogenetic analysis of adaptation. In Adaptation and Optimality, S. Orzack and E. Sober, eds. Cambridge Univ. Press, New York. In press.

Chang, B. S. and M. J. Donoghue. 2000. Recreating ancestral proteins. Trends Ecol. Evol. In press.

Ree, R. H. and M. J. Donoghue. 1999. Inferring rates of change in flower symmetry in asterid angiosperms. Syst. Biol. 48: 633-641.

Ackerly, D. D. and M. J. Donoghue. 1998. Leaf size, sapling allometry, and Corner's rules: Phylogeny and correlated evolution in maples (Acer). Amer. Nat. 152: 767-791.

Donoghue, M. J., R. H. Ree, and D. A. Baum. 1998. Phylogeny and the evolution of flower symmetry in the Asteridae. Trends Plant Sci. 3: 311-317.

Ree, R. H. and M. J. Donoghue. 1998. Step matrices and the interpretation of homoplasy. Syst. Biol. 47: 582-588.

Donoghue, M. J. and D. D. Ackerly. 1996. Phylogenetic uncertainties and sensitivity analyses in comparative biology. Phil. Trans. Roy. Soc. 351: 1241-1249.

Ackerly, D. D. and M. J. Donoghue. 1995. Phylogeny and ecology reconsidered. Jour. Ecology 83: 730-733.

Weller, S. G., M. J. Donoghue, and D. Charlesworth. 1995. The evolution of self-incompatibility in angiosperms: a phylogenetic approach. In Experimental and Molecular Approaches to Plant Biosystematics, pp. 355-382; P. C. Hoch and A. G. Stephenson (eds.). St. Louis: Missouri Bot. Gard.

Donoghue, M.J. and S.M. Scheiner. 1992. The evolution of endosperm: a phylogenetic account. In Ecology and Evolution of Plant Reproduction: New Approaches, pp.356-389; R. Wyatt (ed.). New York: Chapman and Hall.

Donoghue, M.J. 1989. Phylogenies and the analysis of evolutionary sequences, with examples from seed plants. Evolution 43: 1137-1156.